Check engine light after battery replacement
I have a 2020 S560. Just replaced the battery at the dealership at 85k miles, after I was getting some "12V Battery Low" warnings. One day later, the check engine light comes on, and the engine rides rough. I take it to the dealer and they say the battery has nothing to do with it, and charge me $275 diagnostic fee. They say it is possibly due to bad fuel. They recommend INSTALL UPDATED IGNITION COILS & EXHAUST CLAMPS AS FIRST STEP (MISFIRE #1 CYLINDER FAULT CODE, UNABLE TO DUPLICATE CONCERN AT THIS TIME, CHECK ENGINE LIGHT NOT ON)" for $3527.
This is crazy. They check engine problem persists. It is too much of a coincidence for this to happen one day after the battery replacement.
Thoughts?
I have a 2020 S560. Just replaced the battery at the dealership at 85k miles, after I was getting some "12V Battery Low" warnings. One day later, the check engine light comes on, and the engine rides rough. I take it to the dealer and they say the battery has nothing to do with it, and charge me $275 diagnostic fee. They say it is possibly due to bad fuel. They recommend INSTALL UPDATED IGNITION COILS & EXHAUST CLAMPS AS FIRST STEP (MISFIRE #1 CYLINDER FAULT CODE, UNABLE TO DUPLICATE CONCERN AT THIS TIME, CHECK ENGINE LIGHT NOT ON)" for $3527.
This is crazy. They check engine problem persists. It is too much of a coincidence for this to happen one day after the battery replacement.
Thoughts?
“Updated ignition coils & exhaust clamps”? Sounds like 🐂💩to me. Did they give you a printout of the diagnostic report for your $275?
I have a 2020 S560. Just replaced the battery at the dealership at 85k miles, after I was getting some "12V Battery Low" warnings. One day later, the check engine light comes on, and the engine rides rough. I take it to the dealer and they say the battery has nothing to do with it, and charge me $275 diagnostic fee. They say it is possibly due to bad fuel. They recommend INSTALL UPDATED IGNITION COILS & EXHAUST CLAMPS AS FIRST STEP (MISFIRE #1 CYLINDER FAULT CODE, UNABLE TO DUPLICATE CONCERN AT THIS TIME, CHECK ENGINE LIGHT NOT ON)" for $3527.
This is crazy. They check engine problem persists. It is too much of a coincidence for this to happen one day after the battery replacement.
Thoughts?
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"Technician has duplicated the concern and verified present misfire fault at cylinder #1. When allowing vehicle to run at idle and get hot, watched fault counter data of each cylinder and found misfire to climb excessively at cylinder #1. Started with a swap of the ignition coil (swapped to cylinders #5 & 6). Found the misfire to remain at cyl. #1. Swapped spark plugs around from cyl.'s 1 & 2, and again, the misfire is consistent at cylinder #1. The spark plugs were recently replaced (source: rpl. at 70K miles, per CARFAX check). Found spark plugs in OK condition and ruled out the possibility of a bad ignition coil. Technician is asking for additional diagnostic/testing time to perform the necessary testing and bore-scoping to check out cylinder #1. Technician suspects an internal engine failure being as the spark plug is dry which would otherwise be indicative of a leaking injector. If internal engine issue is verified after further checkout, it will be needed to perform a cylinder compression & leak-down test."
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Based on the diagnostics already performed and the fact that the misfire remains isolated to cylinder #1 despite ignition component swaps, here are the most likely possible causes, grouped logically by system. This also supports the technician’s request for additional diagnostic time.
Ruled Out / Less Likely
- Ignition coil failure – Coil swapped to other cylinders with no change.
- Spark plug failure – Plug swapped; condition OK; misfire stayed at #1.
- Basic ignition control issue – Misfire is cylinder-specific, not random.
Most Likely Remaining Causes
1. Mechanical / Internal Engine Issue (High Probability)
Given:- Misfire worsens at hot idle
- Dry spark plug (no fuel fouling)
- Persistent misfire on the same cylinder
- Low compression at cylinder #1
- Burnt, bent, or sticking intake or exhaust valve
- Worn or damaged piston rings
- Cylinder wall scoring
- Head gasket failure (localized to cyl. #1)
2. Fuel Injector Issue (Moderate Probability)
Even though the spark plug is dry:- Injector may be electrically failing (intermittent or heat-related)
- Injector may be clogged or restricted
- Injector driver circuit issue (wiring, PCM output)
- Injector balance test
- Injector resistance test
- Swap injector #1 with another cylinder (if accessible)
- Verify injector pulse with a noid light or scope
3. Valve Train or Timing Issue (Moderate–High Probability)
Especially if bore-scoping is planned:- Valve not seating properly
- Carbon buildup on valve face
- Cam lobe wear affecting valve lift
- Hydraulic lifter collapse (if equipped)
- Valve damage
- Piston crown damage
- Excessive carbon or oil intrusion
4. Vacuum or Intake Leak (Lower Probability)
- Intake runner leak near cylinder #1
- Failed intake gasket
- Cracked intake manifold
5. ECM / Wiring Issue (Lower Probability)
- Faulty injector control circuit for cylinder #1
- Pin fitment or wiring damage
- Rare PCM failure
Recommended Diagnostic Path (Justification for More Time)
- Compression test (hot and cold)
- Cylinder leak-down test
- Bore scope inspection
- Injector electrical and flow testing
- Vacuum leak smoke test (if needed)
Summary
The evidence strongly points toward a mechanical failure within cylinder #1, with fuel delivery issues still possible but less likely given the dry spark plug. Additional diagnostic time is reasonable and necessary to prevent unnecessary parts replacement and to confirm whether internal engine repair is required.If you want, I can also:
- Help you write this up as a warranty claim justification
- Translate it into customer-friendly language
- Rank repair cost risk scenarios based on test outcomes




Moral of the story is that you cannot trust a dealership. They also suggested replacement of the brake pads when my trusted Indy mechanic told me they had 50% of pad left. For future service I need to find a dealership that charges closer to $275 or use my indy to solve problems. Bottom line, doing stuff like battery at dealership is VERY expensive and they also find other things that are 50/50 you do not need.
Moral of the story is that you cannot trust a dealership. They also suggested replacement of the brake pads when my trusted Indy mechanic told me they had 50% of pad left. For future service I need to find a dealership that charges closer to $275 or use my indy to solve problems. Bottom line, doing stuff like battery at dealership is VERY expensive and they also find other things that are 50/50 you do not need.




"Technician has duplicated the concern and verified present misfire fault at cylinder #1. When allowing vehicle to run at idle and get hot, watched fault counter data of each cylinder and found misfire to climb excessively at cylinder #1. Started with a swap of the ignition coil (swapped to cylinders #5 & 6). Found the misfire to remain at cyl. #1. Swapped spark plugs around from cyl.'s 1 & 2, and again, the misfire is consistent at cylinder #1. The spark plugs were recently replaced (source: rpl. at 70K miles, per CARFAX check). Found spark plugs in OK condition and ruled out the possibility of a bad ignition coil. Technician is asking for additional diagnostic/testing time to perform the necessary testing and bore-scoping to check out cylinder #1. Technician suspects an internal engine failure being as the spark plug is dry which would otherwise be indicative of a leaking injector. If internal engine issue is verified after further checkout, it will be needed to perform a cylinder compression & leak-down test."
As far as the dealer; at minimum they should refund your diagnostic fee since they didn't find the problem. Since the fault happens after the car warms up they had time in their one-hour diag fee time. But as far as warrantying the engine, probably no luck at this point. How long have you had the car and who else has worked on it? If you find that cylinder #1 has a problem, it will be interesting to find out what caused it. But you wwon't know anything without scoping the cylinder.
As far as the dealer; at minimum they should refund your diagnostic fee since they didn't find the problem. Since the fault happens after the car warms up they had time in their one-hour diag fee time. But as far as warrantying the engine, probably no luck at this point. How long have you had the car and who else has worked on it? If you find that cylinder #1 has a problem, it will be interesting to find out what caused it. But you wwon't know anything without scoping the cylinder.
This is what the third-party mechanic said -Performed borescope of cylinder #1 and could not really
find concerning enough damage to the cylinder walls that would cause a misfire. Minimal wear and scoring is found which is normal given the age/miles on the
engine. Performed cylinder compression testing at cyl.'s 1 & 2, found compression at cylinder #1 lower than specified (90psi.). Performed check of cylinder #2 to
compare results, which is testing much higher (135psi.) Checked cylinder bore once again to examine the valvetrain as best as possible, particularly the valve
seats for defect. At this time, technician cannot fault a particular (visible) failure with scope. Given the low compression result at cylinder #1, technician is highly
convinced of an internal engine issue but in certain instances like this, tearing down an engine to the point of failure would be the next advised step pending one
more further test of cylinder leak-down.




This is what the third-party mechanic said -Performed borescope of cylinder #1 and could not really
find concerning enough damage to the cylinder walls that would cause a misfire. Minimal wear and scoring is found which is normal given the age/miles on the
engine. Performed cylinder compression testing at cyl.'s 1 & 2, found compression at cylinder #1 lower than specified (90psi.). Performed check of cylinder #2 to
compare results, which is testing much higher (135psi.) Checked cylinder bore once again to examine the valvetrain as best as possible, particularly the valve
seats for defect. At this time, technician cannot fault a particular (visible) failure with scope. Given the low compression result at cylinder #1, technician is highly
convinced of an internal engine issue but in certain instances like this, tearing down an engine to the point of failure would be the next advised step pending one
more further test of cylinder leak-down.

Unfortunately dealership serviced means this car was under serviced from the start...at least for the way I drive or maintain cars.
Did they do a leak down test? I would have first suspected an electronic issue but the compression test is pointing elsewhere. They could even do a gas test of the coolant to rule out head gasket.
Unfortunately the dealer is still not your best bet and it's unlikely at your mileage that you will get a goodwill repair. Best case through a dealer is that they get you into a newer car for little cost.
You really need to really trust your mechanic and find someone with experience with these types of engines. Get it to the best indy around that works deep into engines if you plan on keeping it. Could it be a stuck valve? Could it be much worse.? The cost of the repair will outweigh the move to a new vehicle. If you cant get a perfect diagnosis, youre looking at 20k plus (not them repairing it, but you going to an indy) imo by the time they figure anything out and be prepared for them to offer you an engine for a cool 60k plus.
Any very high dollar engine can be a gamble to own without a warranty so consider extending them if you dont work on the car yourself.
Do you have any pics to share from the scoping. We can help...










